[MMTK] MMTK installation problem

DmitryASuplatov genesup at gmail.com
Tue Mar 24 09:21:50 UTC 2015


Hello,

I am trying to install MMTK on opensuse 13.1 x86_64 (python2.7).

The command "python setup.py build" returns the following error:
----------------------------------------------------------------------------------------
gcc -pthread -fno-strict-aliasing -fmessage-length=0 
-grecord-gcc-switches -fstack-protector -O2 -Wall -D_FORTIFY_SOURCE=2 
-funwind-tables -fasynchronous-unwind-tables -g -DNDEBUG 
-fmessage-length=0 -grecord-gcc-switches -fstack-protector -O2 -Wall 
-D_FORTIFY_SOURCE=2 -funwind-tables -fasynchronous-unwind-tables -g 
-DOPENSSL_LOAD_CONF 
-I*/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/* -fPIC 
-DLIBM_HAS_ERFC -D_LONG64_ -DEXTENDED_TYPES -IInclude 
-I/usr/lib/python2.7/site-packages/numpy/core/include 
-I/usr/include/python2.7 -c Src/MMTK_DCD.c -o 
build/temp.linux-x86_64-2.7/Src/MMTK_DCD.o 
-DUSE_NETCDF_H_FROM_SCIENTIFIC=1 -DNUMPY=1
In file included from Include/MMTK/core.h:11:0,
                  from Include/MMTK/universe.h:9,
                  from Src/MMTK_DCD.c:8:
Include/MMTK/arrayobject.h:2:30: fatal error: numpy/oldnumeric.h: No 
such file or directory
  #include "numpy/oldnumeric.h"
----------------------------------------------------------------------------------------

However, the file in question indeed exists in the include folder 
provided to the compiler (see the bold text above):
----------------------------------------------------------------------------------------
-rw-r--r-- 1 root root 680 Apr  7  2013 
/usr/lib64/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h
----------------------------------------------------------------------------------------

Could you suggest what is my mistake?
And just to avoid confusion - I have no specific interest in numpy, so 
if any other package could be used instead to make MMTK work it would be 
totally OK with me.

Thank you very much for your time,

Best,
Dmitry

--
Dr. Dmitry Suplatov
Senior research scientist
Bioinformatics and structural biology group
Department of Biokinetics
Belozersky Institute of Physicochemical Biology
Lomonosov Moscow State University
1-73 Lenin Hills, 119991 Moscow, Russia
Cell:  +7.903.975.34.22
Phone/Fax:  +7.495.939.46.53
E-mail: d.a.suplatov at gmail.com
E-mail: d.a.suplatov at belozersky.msu.ru


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