[MMTK] about the spring constant

子茗 810918909 at qq.com
Mon Aug 26 09:05:26 UTC 2013

 when use the GNM to calculate the dynamics of a protein, there is a variable to be set,the spring constant.
 However, I have no idea about it, how to set it?  some papers have referred to the least square fitting? how is the procedure?
 and when use the least square fitting, whether to take the K_B*T/gama as an integral or not? and the value of temperature,T,how to find it?
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://starship.python.net/pipermail/mmtk/attachments/20130826/fb342bf1/attachment.html>

More information about the mmtk mailing list