[MMTK] installation

Jinrui Xu jinruixu at umich.edu
Thu Dec 6 14:13:26 UTC 2012


On Thu, Dec 6, 2012 at 2:35 AM, Konrad Hinsen <research at khinsen.fastmail.net
> wrote:

> Jinrui Xu writes:
>
>  > New problems about installation appear when I call " from MMTK.Dynamics
> import
>  > VelocityVerletIntegrator, Heater". The error message is listed below.
> The key line is
>  > "MMTK.Utility.MMTKError: Trajectories are not available because the
> netCDF module is
>  > missing."
>  > I simply installed netcdf-4.1.3. by such commands:  ./configure
> --enable-shared
>  > --disable-netcdf-4; make check install; and there was no error reported.
>
> The Python interface to netCDF is provided by ScientificPython, so you
> need to install ScientificPython *after* installing netCDF. Moreover,
> if netCDF is installed in a non-standard location (neither /usr nor
> /usr/local), then you will have to tell ScientificPython the path to
> the installation directory.
>
> Konrad.
> --
> ---------------------------------------------------------------------
> Konrad Hinsen
> Centre de Biophysique Moléculaire, CNRS Orléans
> Synchrotron Soleil - Division Expériences
> Saint Aubin - BP 48
> 91192 Gif sur Yvette Cedex, France
> Tel. +33-1 69 35 97 15
> E-Mail: research AT khinsen DOT fastmail DOT net
> http://dirac.cnrs-orleans.fr/~hinsen/
> ---------------------------------------------------------------------
>
Hi Konrad,

Thanks for your clue! I solve the problem by setting the path
of /usr/local/lib/libnetcdf.so.7 in my .bashrc. Not sure what cause the
missing of the path.

Jinrui,
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