[MMTK] the modified nucleotides in MMTK

LIU Changdong dongyi2827 at yahoo.com.hk
Wed Jan 5 11:40:35 UTC 2011

Dear all,
  I'm a fresh hand in MMTK and planning to refine a  tRNA model which contains 
the modified nucleotides.
  The model was generated by ModeRNA.
  MMTK discarded the  the modified nucleotides during refinement.
 Although I got the parameter files for   the modified nucleotides in Amber 
format, I read though the manual and
  had no idea how to use and where to put the parameter files in MMTK.

Would you please give any suggestions?

Thanks in advance!


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