[MMTK] Copy/Replace Operations

tezcan at ecs.umass.edu tezcan at ecs.umass.edu
Thu Oct 8 20:36:49 UTC 2009

I am trying to modify/transform a sidechain of a residue, save it and  
replace sidechains with modified versions as necessary.
Following might give you a better idea of what I am trying to  
do:(suppose I have a function called modify()):

#now suppose I need the original back or want to replace it with  
another version

I have tried few different ways to do this but I get crazy results  
from universe.energy(universe.protein[0][1]) after replacement, so I  
know I am doing something wrong. What is the proper way of doing this  
type of copy/replace operations in MMTK?
Thanks for your help.

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