[MMTK] MMTK 2.5.25

Ramon Crehuet rcrehuet at gmail.com
Fri May 15 17:12:15 UTC 2009


My apologies!!!
I hadn't checked the mailing list with enough detail. I should have found:
http://starship.python.net/pipermail/mmtk/2007/001253.html
which solves the problem.
Sorry for your time.

Ramon

PD. Apparently the bug in the paths is still there in OpenSuse 11.1. :-(


2009/5/15 Ramon Crehuet <rcrehuet at gmail.com>

> Hi,
> Thanks for the continous development Konrad! I am trying this new version.
> Unfortunately I have a problem with MMTK. During the compilation, it cannot
> find netcdfmodule.h. It looks like the typical netCDF library problem, but
> Scientific Python could find netCDF (although I had to change lib with lib64
> in my machine in a couple of lines in setup.py) and netcdf_demo.py works. So
> I don't know where this netcdf.h should be.
> Thanks,
> Ramon
>
>
> building 'MMTK_DCD' extension
> gcc -pthread -fno-strict-aliasing -DNDEBUG -fmessage-length=0 -O2 -Wall
> -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables
> -fasynchronous-unwind-tables -g -fwrapv -fPIC -DLIBM_HAS_ERFC -D_LONG64_
> -DEXTENDED_TYPES -IInclude
> -I/usr/lib64/python2.6/site-packages/numpy/core/include
> -I/usr/include/python2.6 -c Src/MMTK_DCD.c -o
> build/temp.linux-x86_64-2.6/Src/MMTK_DCD.o -DUSE_NETCDF_H_FROM_SCIENTIFIC=1
> -DNUMPY=1
> In file included from Src/MMTK_DCD.c:9:
> Include/MMTK/trajectory.h:13:37: error: Scientific/netcdfmodule.h: No such
> file or directory
> Include/MMTK/trajectory.h:15:32: error: Scientific/netcdf.h: No such file
> or directory
> In file included from Src/MMTK_DCD.c:9:
> Include/MMTK/trajectory.h:41: error: expected specifier-qualifier-list
> before ‘PyNetCDFFileObject’
> error: command 'gcc' failed with exit status 1
>
> 2009/5/15 Konrad Hinsen <hinsen at cnrs-orleans.fr>
>
> A new development release of MMTK is available for download. The code has
>> been completely revised, and the documentation rewritten. An automatically
>> generated reference manual is now available (see Doc/Reference/index.html).
>> Other improvements include NumPy 1.2 compatibility (no more warnings) and
>> minor bug fixes.
>>
>> This release will be the basis of the next stable release, 2.6. Please
>> test it as much as you can!
>>
>> Konrad.
>> --
>> ---------------------------------------------------------------------
>> Konrad Hinsen
>> Centre de Biophysique Moléculaire, CNRS Orléans
>> Synchrotron Soleil - Division Expériences
>> Saint Aubin - BP 48
>> 91192 Gif sur Yvette Cedex, France
>> Tel. +33-1 69 35 97 15
>> E-Mail: hinsen at cnrs-orleans.fr
>> Web: http://dirac.cnrs-orleans.fr/~hinsen/<http://dirac.cnrs-orleans.fr/%7Ehinsen/>
>> ---------------------------------------------------------------------
>>
>>
>>
>>
>> _______________________________________________
>> mmtk maillist  -  mmtk at starship.python.net
>> http://starship.python.net/mailman/listinfo/mmtk
>>
>
>
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