[MMTK] Segmentation Fault with certain visualization code
William K. Browne
wkbrowne at berkeley.edu
Wed Jul 26 21:21:11 CEST 2006
In the visualization module in MMTK 2.5.13 running on the os fedora core 5
the function viewSequence gives a segmentation fault. What's strange is
that vmd works fine with the code view(universe, configuration). I have
traced the error as occurring in the MMTK_DCD module in the function
writeDCDstep. So with an otherwise valid configuration file, the code:
>>from MMTK.Trajectory import Trajectory
>>t = Trajectory(None, "equilibration.nc", "r")
>>t.view()
Segmentation Fault.
While the code
>>from MMTK.Trajectory import Trajectory
>>from MMTK.Visualization import view
>> t = Trajectory(None, "equilibration.nc", "r")
>>step10 = t[10]
>>view(t.universe,step10['configuration'])
Executes perfectly. Any ideas? - thanks in advance.
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