[MMTK] Can MMTK handle neutral N-termini?

[Dr. Seth Olsen]

Is there a way to make MMTK handle neutral N-termini? I have performed some
Poisson-Boltzman calculations which indicate that the N-terminus of my
protein-of-interest is likely neutral at pH 7. I cannot find an entry in the
database to the tune of 'peptide_nt_neutral'. Is there a workaround already
or is that my new job?

Cheers,

Seth

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Dr Seth Olsen, PhD
Postdoctoral Fellow, Biomolecular Modeling Group
Centre for Computational Molecular Science
Chemistry Building,
The University of Queensland
Qld 4072, Brisbane, Australia

tel (617) 33653732
fax (617) 33654623
email: s.olsen1 at uq.edu.au
Web: www.ccms.uq.edu.au <http://www.ccms.uq.edu.au>

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