[MMTK] MMTK Install Problem

Justin Lemkul jalemkul at vt.edu
Fri Feb 4 15:07:06 CET 2005


Hello all,

I am having a problem installing MMTK.  During the "build" phase, everything
appears to be going right, files are copied, files are transferred into the 
ForceFields
directory and Tools/TrajectoryViewer directory, and then I start having 
problems.  I'll pick 
up the code from the point where I start getting errors:

running build_ext
building 'lapack_mmtk' extension
creating build/temp.darwin-7.7.0-Power_Macintosh-2.3
creating build/temp.darwin-7.7.0-Power_Macintosh-2.3/Src
gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd
-fno-common
-dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -DLIBM_HAS_ERFC
-DEXTENDED_TYPES -IInclude
-I/System/Library/Frameworks/Python.framework/Versions/
2.3/include/python2.3 -c Src/lapack_subset.c -o
build/temp.darwin-7.7.0-Power_Macintosh
-2.3/Src/lapack_subset.o
Src/lapack_subset.c:353: warning: function declaration isn't a prototype
Src/lapack_subset.c:354: warning: function declaration isn't a prototype
Src/lapack_subset.c:355: warning: function declaration isn't a prototype
Src/lapack_subset.c:356: warning: function declaration isn't a prototype
Src/lapack_subset.c:357: warning: function declaration isn't a prototype
Src/lapack_subset.c:357: warning: function declaration isn't a prototype
Src/lapack_subset.c:358: warning: function declaration isn't a prototype
Src/lapack_subset.c:359: warning: function declaration isn't a prototype
Src/lapack_subset.c:360: warning: function declaration isn't a prototype
Src/lapack_subset.c:361: warning: function declaration isn't a prototype
Src/lapack_subset.c:362: warning: function declaration isn't a prototype
Src/lapack_subset.c:363: warning: function declaration isn't a prototype
Src/lapack_subset.c: In function `dgesvd_':
Src/lapack_subset.c:510: warning: suggest parentheses around && within ||
Src/lapack_subset.c:518: warning: suggest parentheses around && within ||
Src/lapack_subset.c:520: warning: suggest parentheses around && within ||
Src/lapack_subset.c:520: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dormbr_':
Src/lapack_subset.c:4580: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dormlq_':
Src/lapack_subset.c:5411: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dormqr_':
Src/lapack_subset.c:5629: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dorml2_':
Src/lapack_subset.c:5916: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dorm2r_':
Src/lapack_subset.c:6043: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dorgbr_':
Src/lapack_subset.c:6412: warning: suggest parentheses around && within ||
Src/lapack_subset.c:6413: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dbdsqr_':
Src/lapack_subset.c:6909: warning: suggest parentheses around && within ||
Src/lapack_subset.c:6913: warning: suggest parentheses around && within ||
Src/lapack_subset.c:7160: warning: suggest parentheses around && within ||
Src/lapack_subset.c:7193: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dlasq2_':
Src/lapack_subset.c:7977: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8056: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8057: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8077: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8091: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8135: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8232: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c: In function `dlasq3_':
Src/lapack_subset.c:8430: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8431: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8500: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8505: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c: In function `dlasq5_':
Src/lapack_subset.c:8918: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8931: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8949: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8969: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:8985: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:9006: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c: In function `dlasq6_':
Src/lapack_subset.c:9070: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:9094: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c:9123: warning: suggest parentheses around + or - inside
shift
Src/lapack_subset.c: In function `dlamc2_':
Src/lapack_subset.c:10213: warning: int format, integer arg (arg 2)
Src/lapack_subset.c:10030: warning: unused variable `c__1'
Src/lapack_subset.c: In function `dlascl_':
Src/lapack_subset.c:11834: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11834: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11847: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11850: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11850: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dsteqr_':
Src/lapack_subset.c:13682: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `ilaenv_':
Src/lapack_subset.c:14976: warning: suggest parentheses around && within ||
Src/lapack_subset.c:14977: warning: suggest parentheses around && within ||
Src/lapack_subset.c:14981: warning: suggest parentheses around && within ||
Src/lapack_subset.c:14982: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `lsame_':
Src/lapack_subset.c:15571: warning: suggest parentheses around && within ||
Src/lapack_subset.c:15572: warning: suggest parentheses around && within ||
Src/lapack_subset.c:15575: warning: suggest parentheses around && within ||
Src/lapack_subset.c:15576: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `xerbla_':
Src/lapack_subset.c:15610: warning: int format, long int arg (arg 3)
Src/lapack_subset.c: In function `f2c_dsymv':
Src/lapack_subset.c:15727: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `f2c_dsyr2k':
Src/lapack_subset.c:16235: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `f2c_dgemv':
Src/lapack_subset.c:16955: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `f2c_dgemm':
Src/lapack_subset.c:17475: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `blas_lsame_':
Src/lapack_subset.c:18270: warning: suggest parentheses around && within ||
Src/lapack_subset.c:18271: warning: suggest parentheses around && within ||
Src/lapack_subset.c:18274: warning: suggest parentheses around && within ||
Src/lapack_subset.c:18275: warning: suggest parentheses around && within ||
Src/lapack_subset.c: At top level:
Src/lapack_subset.c:18518: warning: `memfailure' defined but not used
gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd
-fno-common
-dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -DLIBM_HAS_ERFC
-DEXTENDED_TYPES -IInclude
-I/System/Library/Frameworks/Python.framework/Versions/
2.3/include/python2.3 -c Src/lapack_mmtk.c -o
build/temp.darwin-7.7.0-Power_Macintosh
-2.3/Src/lapack_mmtk.o
Src/lapack_mmtk.c:6: warning: function declaration isn't a prototype
Src/lapack_mmtk.c:11: warning: function declaration isn't a prototype
Src/lapack_mmtk.c: In function `lapack_mmtk_dsyev':
Src/lapack_mmtk.c:81: warning: implicit declaration of function `dsyev_'
Src/lapack_mmtk.c: In function `lapack_mmtk_dgesvd':
Src/lapack_mmtk.c:118: warning: implicit declaration of function `dgesvd_'
Src/lapack_mmtk.c: At top level:
Src/lapack_mmtk.c:134: warning: function declaration isn't a prototype
Src/lapack_mmtk.c:132: warning: `lapack_mmtkError' defined but not used
creating build/lib.darwin-7.7.0-Power_Macintosh-2.3/MMTK/darwin
gcc -Wl,-F. -Wl,-F. -bundle -framework Python
build/temp.darwin-7.7.0-Power_Macintosh
-2.3/Src/lapack_subset.o
build/temp.darwin-7.7.0-Power_Macintosh-2.3/Src/lapack_mmtk.o
-o build/lib.darwin-7.7.0-Power_Macintosh-2.3/MMTK/darwin/lapack_mmtk.so
building 'MMTK_DCD' extension
gcc -fno-strict-aliasing -Wno-long-double -no-cpp-precomp -mno-fused-madd
-fno-common
-dynamic -DNDEBUG -g -O3 -Wall -Wstrict-prototypes -DLIBM_HAS_ERFC
-DEXTENDED_TYPES -IInclude
-I/System/Library/Frameworks/Python.framework/Versions/
2.3/include/python2.3 -c Src/MMTK_DCD.c -o
build/temp.darwin-7.7.0-Power_Macintosh-2.3/
Src/MMTK_DCD.o
In file included from Src/MMTK_DCD.c:9:
Include/MMTK/trajectory.h:14:20: netcdf.h: No such file or directory
Include/MMTK/universe.h:109: warning: `PyUniverse_API' defined but not used
/System/Library/Frameworks/Python.framework/Versions/2.3/include/python2.3/Sci
entific/
netcdfmodule.h:242: warning: `PyNetCDF_API' defined but not used
error: command 'gcc' failed with exit status 1

If anyone has any ideas, I would be most appreciative.  I am running a Mac OSX
v10.3, NumPy 23.7, gcc 3.3, Scientific Python 2.4.3.

Thanks!
-Justin




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