[MMTK] speed

Christian Kristukat gekauft at hoc.net
Mon Nov 15 14:37:37 CET 2004


hinsen at llb.saclay.cea.fr wrote:
> On 09.11.2004, at 18:03, Christian Kristukat wrote:
> 
>> Oh, I thought I wrote this in a second mail. More precisely the  
>> function call to lapack_mmtk.dsyev in NormalModes.py doesn't return.
>>
> That looks weird... could you try to recompile and watch for suspect  
> compiler warnings?

I've attached the error log.
More confusingly I've got two almost identical systems (both are SuSE) 
with blas libraires (those which ship with SuSE) installed and one of 
them works, the other not. What does MMTK depend on? Apparently you 
don't need the lapack libraries...? I tried ATLAS too without success.

> A possible workaround is to install the full PyLapack package with a  
> full LAPACK library (preferably the faster Fortran versions). MMTK will  
> use that if it can find it.

I couldn't get PyLapack running, even though I enabled the __hack__ .
I tried the following:

Python 2.3.4 (#1, Oct  5 2004, 00:26:51)
[GCC 3.3.4 (pre 3.3.5 20040809)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
 >>> from Numeric import *
 >>> import  lapack_dge
Traceback (most recent call last):
   File "<stdin>", line 1, in ?
ImportError: /usr/lib/libf2c.so.0: undefined symbol: MAIN__

and:

Python 2.3.4 (#1, Oct  5 2004, 00:26:51)
[GCC 3.3.4 (pre 3.3.5 20040809)] on linux2
Type "help", "copyright", "credits" or "license" for more information.
 >>> from Numeric import *
 >>> import __hack__
Traceback (most recent call last):
   File "<stdin>", line 1, in ?
SystemError: dynamic module not initialized properly
 >>> import hack
 >>> import  lapack_dge
Traceback (most recent call last):
   File "<stdin>", line 1, in ?
ImportError: /usr/lib/python2.3/site-packages/lapack_dge.so: undefined 
symbol: ATL_xerbla

-------------- next part --------------
running build
running build_py
running build_ext
building 'lapack_mmtk' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/lapack_subset.c -o build/temp.linux-i686-2.3/Src/lapack_subset.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/lapack_subset.c: In function `dgesvd_':
Src/lapack_subset.c:510: warning: suggest parentheses around && within ||
Src/lapack_subset.c:518: warning: suggest parentheses around && within ||
Src/lapack_subset.c:520: warning: suggest parentheses around && within ||
Src/lapack_subset.c:520: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dormbr_':
Src/lapack_subset.c:4580: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dormlq_':
Src/lapack_subset.c:5411: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dormqr_':
Src/lapack_subset.c:5629: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dorml2_':
Src/lapack_subset.c:5916: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dorm2r_':
Src/lapack_subset.c:6043: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dorgbr_':
Src/lapack_subset.c:6412: warning: suggest parentheses around && within ||
Src/lapack_subset.c:6413: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dbdsqr_':
Src/lapack_subset.c:6909: warning: suggest parentheses around && within ||
Src/lapack_subset.c:6913: warning: suggest parentheses around && within ||
Src/lapack_subset.c:7159: warning: suggest parentheses around && within ||
Src/lapack_subset.c:7193: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dlasq2_':
Src/lapack_subset.c:7977: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8056: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8057: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8077: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8091: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8135: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8232: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c: In function `dlasq3_':
Src/lapack_subset.c:8430: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8431: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8500: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8505: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c: In function `dlasq5_':
Src/lapack_subset.c:8918: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8931: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8949: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8969: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:8985: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:9006: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c: In function `dlasq6_':
Src/lapack_subset.c:9070: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:9094: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c:9123: warning: suggest parentheses around + or - inside shift
Src/lapack_subset.c: In function `dlamc2_':
Src/lapack_subset.c:10213: warning: int format, integer arg (arg 2)
Src/lapack_subset.c:10030: warning: unused variable `c__1'
Src/lapack_subset.c: In function `dlascl_':
Src/lapack_subset.c:11834: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11834: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11847: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11850: warning: suggest parentheses around && within ||
Src/lapack_subset.c:11850: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `dsteqr_':
Src/lapack_subset.c:13682: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `ilaenv_':
Src/lapack_subset.c:14976: warning: suggest parentheses around && within ||
Src/lapack_subset.c:14977: warning: suggest parentheses around && within ||
Src/lapack_subset.c:14981: warning: suggest parentheses around && within ||
Src/lapack_subset.c:14982: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `lsame_':
Src/lapack_subset.c:15571: warning: suggest parentheses around && within ||
Src/lapack_subset.c:15572: warning: suggest parentheses around && within ||
Src/lapack_subset.c:15575: warning: suggest parentheses around && within ||
Src/lapack_subset.c:15576: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `xerbla_':
Src/lapack_subset.c:15610: warning: int format, long int arg (arg 3)
Src/lapack_subset.c: In function `f2c_dsymv':
Src/lapack_subset.c:15727: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `f2c_dsyr2k':
Src/lapack_subset.c:16235: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `f2c_dgemv':
Src/lapack_subset.c:16955: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `f2c_dgemm':
Src/lapack_subset.c:17475: warning: suggest parentheses around && within ||
Src/lapack_subset.c: In function `blas_lsame_':
Src/lapack_subset.c:18270: warning: suggest parentheses around && within ||
Src/lapack_subset.c:18271: warning: suggest parentheses around && within ||
Src/lapack_subset.c:18274: warning: suggest parentheses around && within ||
Src/lapack_subset.c:18275: warning: suggest parentheses around && within ||
Src/lapack_subset.c: At top level:
Src/lapack_subset.c:18518: warning: `memfailure' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/lapack_mmtk.c -o build/temp.linux-i686-2.3/Src/lapack_mmtk.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/lapack_mmtk.c: In function `lapack_mmtk_dsyev':
Src/lapack_mmtk.c:81: warning: implicit declaration of function `dsyev_'
Src/lapack_mmtk.c: In function `lapack_mmtk_dgesvd':
Src/lapack_mmtk.c:118: warning: implicit declaration of function `dgesvd_'
Src/lapack_mmtk.c: At top level:
Src/lapack_mmtk.c:132: warning: `lapack_mmtkError' defined but not used
creating build/lib.linux-i686-2.3/MMTK/linux2
gcc -pthread -shared build/temp.linux-i686-2.3/Src/lapack_subset.o build/temp.linux-i686-2.3/Src/lapack_mmtk.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/lapack_mmtk.so
building 'MMTK_DCD' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/ReadDCD.c -o build/temp.linux-i686-2.3/Src/ReadDCD.o
Src/ReadDCD.c: In function `write_dcdheader':
Src/ReadDCD.c:616: warning: `%y' yields only last 2 digits of year
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_DCD.c -o build/temp.linux-i686-2.3/Src/MMTK_DCD.o
Include/MMTK/universe.h:109: warning: `PyUniverse_API' defined but not used
/usr/include/python2.3/Scientific/netcdfmodule.h:242: warning: `PyNetCDF_API' defined but not used
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_DCD.o build/temp.linux-i686-2.3/Src/ReadDCD.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_DCD.so
building 'MMTK_deformation' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_deformation.c -o build/temp.linux-i686-2.3/Src/MMTK_deformation.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/MMTK_deformation.c: In function `reduce_deformation_py':
Src/MMTK_deformation.c:251: warning: `max_k' might be used uninitialized in this function
Src/MMTK_deformation.c: In function `calpha_evaluator':
Src/MMTK_deformation.c:558: warning: `deriv2' might be used uninitialized in this function
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_deformation.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_deformation.so
building 'MMTK_dynamics' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_dynamics.c -o build/temp.linux-i686-2.3/Src/MMTK_dynamics.o
Src/MMTK_dynamics.c: In function `integrateVV':
Src/MMTK_dynamics.c:415: warning: `const_vect' might be used uninitialized in this function
Src/MMTK_dynamics.c:419: warning: `pdata' might be used uninitialized in this function
Src/MMTK_dynamics.c:424: warning: `t_temp' might be used uninitialized in this function
Src/MMTK_dynamics.c:425: warning: `b_tau' might be used uninitialized in this function
Src/MMTK_dynamics.c:425: warning: `b_mass' might be used uninitialized in this function
Src/MMTK_dynamics.c:426: warning: `dalpha' might be used uninitialized in this function
Src/MMTK_dynamics.c: At top level:
/usr/include/python2.3/Scientific/netcdfmodule.h:242: warning: `PyNetCDF_API' defined but not used
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_dynamics.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_dynamics.so
building 'MMTK_minimization' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_minimization.c -o build/temp.linux-i686-2.3/Src/MMTK_minimization.o
Src/MMTK_minimization.c: In function `conjugateGradient':
Src/MMTK_minimization.c:290: warning: `i' might be used uninitialized in this function
Src/MMTK_minimization.c: In function `steepestDescent':
Src/MMTK_minimization.c:119: warning: `min_energy' might be used uninitialized in this function
Src/MMTK_minimization.c:119: warning: `min_norm' might be used uninitialized in this function
Src/MMTK_minimization.c: At top level:
/usr/include/python2.3/Scientific/netcdfmodule.h:242: warning: `PyNetCDF_API' defined but not used
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_minimization.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_minimization.so
building 'MMTK_surface' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_surface.c -o build/temp.linux-i686-2.3/Src/MMTK_surface.o
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_surface.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_surface.so
building 'MMTK_trajectory' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_trajectory.c -o build/temp.linux-i686-2.3/Src/MMTK_trajectory.o
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_trajectory.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_trajectory.so
building 'MMTK_universe' extension
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -I/usr/include/python2.3 -c Src/MMTK_universe.c -o build/temp.linux-i686-2.3/Src/MMTK_universe.o
Src/MMTK_universe.c: In function `configuration_change_lock_py':
Src/MMTK_universe.c:498: warning: `success' might be used uninitialized in this function
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_universe.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_universe.so
building 'MMTK_forcefield' extension
creating build/temp.linux-i686-2.3/Src/dpmta
creating build/temp.linux-i686-2.3/Src/dpmta/mpole
creating build/temp.linux-i686-2.3/Src/dpmta/src
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvmkil.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmkil.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvmkil.c:12: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/mpole/mpe_fft.c -o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_fft.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/mpole/mpe_fft.c:37: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `row_fft':
Src/dpmta/mpole/mpe_fft.c:45: warning: unused variable `i'
Src/dpmta/mpole/mpe_fft.c:49: warning: unused variable `i'
Src/dpmta/mpole/mpe_fft.c:55: warning: implicit declaration of function `ffth'
Src/dpmta/mpole/mpe_fft.c:59: warning: implicit declaration of function `exit'
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:65: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `row_ifft':
Src/dpmta/mpole/mpe_fft.c:72: warning: unused variable `i'
Src/dpmta/mpole/mpe_fft.c:76: warning: unused variable `i'
Src/dpmta/mpole/mpe_fft.c:82: warning: implicit declaration of function `iffth'
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:92: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `col_fft':
Src/dpmta/mpole/mpe_fft.c:111: warning: implicit declaration of function `fftv'
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:120: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `col_ifft':
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `tempr'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `tempi'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i0'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i1'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i2'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i3'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i4'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i5'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i6'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i7'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i8'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i9'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i10'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i11'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i12'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i13'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i14'
Src/dpmta/mpole/mpe_fft.c:133: warning: unused variable `i15'
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:147: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `col_fftS':
Src/dpmta/mpole/mpe_fft.c:148: warning: unused variable `j'
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:172: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `col_ifftS':
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `tempr'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `tempi'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i0'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i1'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i2'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i3'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i4'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i5'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i6'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i7'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i8'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i9'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i10'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i11'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i12'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i13'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i14'
Src/dpmta/mpole/mpe_fft.c:189: warning: unused variable `i15'
Src/dpmta/mpole/mpe_fft.c:173: warning: unused variable `j'
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:200: warning: return type defaults to `int'
Src/dpmta/mpole/mpe_fft.c: In function `ffth':
Src/dpmta/mpole/mpe_fft.c:264: warning: implicit declaration of function `four1'
Src/dpmta/mpole/mpe_fft.c:249: warning: unused variable `i'
Src/dpmta/mpole/mpe_fft.c:271: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_fft.c: In function `iffth':
Src/dpmta/mpole/mpe_fft.c:275: warning: unused variable `negone'
Src/dpmta/mpole/mpe_fft.c:276: warning: unused variable `i'
Src/dpmta/mpole/mpe_fft.c:295: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_fft.c: In function `four1':
Src/dpmta/mpole/mpe_fft.c:343: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_fft.c: In function `col_ifftS':
Src/dpmta/mpole/mpe_fft.c:194: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `fftv':
Src/dpmta/mpole/mpe_fft.c:243: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `col_ifft':
Src/dpmta/mpole/mpe_fft.c:144: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `col_fft':
Src/dpmta/mpole/mpe_fft.c:116: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `four1':
Src/dpmta/mpole/mpe_fft.c:343: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `iffth':
Src/dpmta/mpole/mpe_fft.c:295: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `ffth':
Src/dpmta/mpole/mpe_fft.c:271: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `col_fftS':
Src/dpmta/mpole/mpe_fft.c:169: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `row_ifft':
Src/dpmta/mpole/mpe_fft.c:88: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: In function `row_fft':
Src/dpmta/mpole/mpe_fft.c:61: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_fft.c: At top level:
Src/dpmta/mpole/mpe_fft.c:14: warning: `RCSid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_timer.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_timer.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_timer.c:11: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/mpole/mpe_allocC.c -o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_allocC.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/mpole/mpe_allocC.c: In function `Calloc':
Src/dpmta/mpole/mpe_allocC.c:52: warning: unused variable `m'
Src/dpmta/mpole/mpe_allocC.c: At top level:
Src/dpmta/mpole/mpe_allocC.c:12: warning: `RCSid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/mpole/mpe_misc.c -o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_misc.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/mpole/mpe_misc.c: In function `MathdumpY_C':
Src/dpmta/mpole/mpe_misc.c:135: warning: unused variable `scratch'
Src/dpmta/mpole/mpe_misc.c: At top level:
Src/dpmta/mpole/mpe_misc.c:12: warning: `RCSid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvmcalc.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmcalc.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvmcalc.c: In function `Slave_MPE_Calc':
Src/dpmta/src/dpmta_slvmcalc.c:546: warning: implicit declaration of function `exit'
Src/dpmta/src/dpmta_slvmcalc.c: At top level:
Src/dpmta/src/dpmta_slvmcalc.c:17: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_distmisc.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_distmisc.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_distmisc.c:17: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/mpole/mpe_mpoleC.c -o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_mpoleC.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/mpole/mpe_mpoleC.c: In function `AddMultipoleC':
Src/dpmta/mpole/mpe_mpoleC.c:128: warning: implicit declaration of function `Cart2Sph'
Src/dpmta/mpole/mpe_mpoleC.c:142: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_mpoleC.c: In function `Force_C_Y':
Src/dpmta/mpole/mpe_mpoleC.c:703: warning: unused variable `vect'
Src/dpmta/mpole/mpe_mpoleC.c:704: warning: unused variable `svect'
Src/dpmta/mpole/mpe_mpoleC.c:802: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_mpoleC.c: In function `Force_C':
Src/dpmta/mpole/mpe_mpoleC.c:1028: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_mpoleC.c: In function `ForceM_C':
Src/dpmta/mpole/mpe_mpoleC.c:1221: warning: no return statement in function returning non-void
Src/dpmta/mpole/mpe_mpoleC.c: In function `Cinit':
Src/dpmta/mpole/mpe_mpoleC.c:1335: warning: unused variable `l'
Src/dpmta/mpole/mpe_mpoleC.c: In function `M2L_C_F':
Src/dpmta/mpole/mpe_mpoleC.c:1588: warning: implicit declaration of function `row_fft'
Src/dpmta/mpole/mpe_mpoleC.c:1590: warning: implicit declaration of function `col_fft'
Src/dpmta/mpole/mpe_mpoleC.c:1552: warning: unused variable `rho'
Src/dpmta/mpole/mpe_mpoleC.c:1552: warning: unused variable `alpha'
Src/dpmta/mpole/mpe_mpoleC.c:1552: warning: unused variable `beta'
Src/dpmta/mpole/mpe_mpoleC.c:1552: warning: unused variable `atemp'
Src/dpmta/mpole/mpe_mpoleC.c:1553: warning: unused variable `scratch'
Src/dpmta/mpole/mpe_mpoleC.c: In function `M2L_C_Fshort':
Src/dpmta/mpole/mpe_mpoleC.c:1639: warning: unused variable `n'
Src/dpmta/mpole/mpe_mpoleC.c:1639: warning: unused variable `m'
Src/dpmta/mpole/mpe_mpoleC.c:1640: warning: unused variable `fullsize'
Src/dpmta/mpole/mpe_mpoleC.c:1641: warning: unused variable `pbig'
Src/dpmta/mpole/mpe_mpoleC.c:1642: warning: unused variable `scratch'
Src/dpmta/mpole/mpe_mpoleC.c:1647: warning: unused variable `negone'
Src/dpmta/mpole/mpe_mpoleC.c: In function `Unwarp_M2L':
Src/dpmta/mpole/mpe_mpoleC.c:1743: warning: implicit declaration of function `col_ifft'
Src/dpmta/mpole/mpe_mpoleC.c:1745: warning: implicit declaration of function `row_ifft'
Src/dpmta/mpole/mpe_mpoleC.c: In function `CMclearFshort':
Src/dpmta/mpole/mpe_mpoleC.c:2016: warning: unused variable `j'
Src/dpmta/mpole/mpe_mpoleC.c: In function `Warp_Short':
Src/dpmta/mpole/mpe_mpoleC.c:2125: warning: implicit declaration of function `col_fftS'
Src/dpmta/mpole/mpe_mpoleC.c: In function `AddMultipoleC':
Src/dpmta/mpole/mpe_mpoleC.c:142: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_mpoleC.c: In function `ForceM_C':
Src/dpmta/mpole/mpe_mpoleC.c:1221: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_mpoleC.c: In function `Force_C':
Src/dpmta/mpole/mpe_mpoleC.c:1028: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_mpoleC.c: In function `Force_C_Y':
Src/dpmta/mpole/mpe_mpoleC.c:802: warning: control reaches end of non-void function
Src/dpmta/mpole/mpe_mpoleC.c: At top level:
Src/dpmta/mpole/mpe_mpoleC.c:11: warning: `RCSid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvscale.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvscale.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvscale.c:12: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/nonbonded.c -o build/temp.linux-i686-2.3/Src/nonbonded.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/nonbonded.c: In function `nblist_iterate':
Src/nonbonded.c:365: warning: control reaches end of non-void function
Src/nonbonded.c: In function `nonbonded_evaluator':
Src/nonbonded.c:555: warning: `eps_sigma' might be used uninitialized in this function
Src/nonbonded.c:555: warning: `ntypes' might be used uninitialized in this function
Src/nonbonded.c:555: warning: `lj_type' might be used uninitialized in this function
Src/nonbonded.c:556: warning: `lj_cutoff_sq' might be used uninitialized in this function
Src/nonbonded.c:556: warning: `lj_one_four' might be used uninitialized in this function
Src/nonbonded.c:557: warning: `charge' might be used uninitialized in this function
Src/nonbonded.c:557: warning: `es_cutoff_sq' might be used uninitialized in this function
Src/nonbonded.c:557: warning: `es_inv_cutoff' might be used uninitialized in this function
Src/nonbonded.c:557: warning: `es_one_four' might be used uninitialized in this function
Src/nonbonded.c:558: warning: `ewald_cutoff_sq' might be used uninitialized in this function
Src/nonbonded.c:558: warning: `beta' might be used uninitialized in this function
Src/nonbonded.c:558: warning: `erfc_cutoff' might be used uninitialized in this function
Src/nonbonded.c:558: warning: `ewald_one_four' might be used uninitialized in this function
Src/nonbonded.c:651: warning: `r' might be used uninitialized in this function
Src/nonbonded.c:671: warning: `r' might be used uninitialized in this function
Src/nonbonded.c:676: warning: `r' might be used uninitialized in this function
Src/nonbonded.c: At top level:
Include/MMTK/universe.h:109: warning: `PyUniverse_API' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvmkhl.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmkhl.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvmkhl.c:13: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/ewald.c -o build/temp.linux-i686-2.3/Src/ewald.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/ewald.c: In function `reciprocal_sum':
Src/ewald.c:216: warning: unused variable `j'
Src/ewald.c: At top level:
Include/MMTK/universe.h:109: warning: `PyUniverse_API' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_serial.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_serial.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_serial.c:17: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvglobals.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvglobals.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvglobals.c:17: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvmkcell.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmkcell.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvmkcell.c:13: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvcompute.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvcompute.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvcompute.c:15: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/mpole/mpe_allocLJ.c -o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_allocLJ.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/mpole/mpe_allocLJ.c: In function `LJalloc':
Src/dpmta/mpole/mpe_allocLJ.c:53: warning: unused variable `m'
Src/dpmta/mpole/mpe_allocLJ.c: At top level:
Src/dpmta/mpole/mpe_allocLJ.c:11: warning: `RcsId' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/bonded.c -o build/temp.linux-i686-2.3/Src/bonded.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/bonded.c: In function `cosine_dihedral_evaluator':
Src/bonded.c:360: warning: `sqr_cos_phi' might be used uninitialized in this function
Src/bonded.c:360: warning: `cos_n_phi' might be used uninitialized in this function
Src/bonded.c:361: warning: `sin_phi' might be used uninitialized in this function
Src/bonded.c:361: warning: `sin_n_phi_ratio' might be used uninitialized in this function
Src/bonded.c:362: warning: `dphi' might be used uninitialized in this function
Src/bonded.c:362: warning: `cos_phase' might be used uninitialized in this function
Src/bonded.c:362: warning: `sin_phase' might be used uninitialized in this function
Src/bonded.c: At top level:
Include/MMTK/universe.h:109: warning: `PyUniverse_API' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvpcalc.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvpcalc.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvpcalc.c: In function `Slave_Direct_Calc':
Src/dpmta/src/dpmta_slvpcalc.c:202: warning: implicit declaration of function `exit'
Src/dpmta/src/dpmta_slvpcalc.c: At top level:
Src/dpmta/src/dpmta_slvpcalc.c:17: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/sparsefc.c -o build/temp.linux-i686-2.3/Src/sparsefc.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/sparsefc.c: In function `PySparseFC_VectorSolve':
Src/sparsefc.c:334: warning: `rho' might be used uninitialized in this function
Src/sparsefc.c: At top level:
Include/MMTK/universe.h:109: warning: `PyUniverse_API' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/src/dpmta_slvmacro.c -o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmacro.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/src/dpmta_slvmacro.c:23: warning: `rcsid' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/MMTK_forcefield.c -o build/temp.linux-i686-2.3/Src/MMTK_forcefield.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/MMTK_forcefield.c: In function `evaluator':
Src/MMTK_forcefield.c:641: warning: unused variable `done'
Src/MMTK_forcefield.c: In function `initMMTK_forcefield':
Src/MMTK_forcefield.c:1876: warning: unused variable `mpi_module'
Src/MMTK_forcefield.c: At top level:
Src/MMTK_forcefield.c:40: warning: `PyExc_MPIError' defined but not used
gcc -pthread -fno-strict-aliasing -DNDEBUG -O2 -march=i586 -mcpu=i686 -fmessage-length=0 -Wall -fPIC -DWITH_DPMTA -DSERIAL -DVIRIAL -DMACROSCOPIC -DLIBM_HAS_ERFC -DEXTENDED_TYPES -IInclude -ISrc -ISrc/dpmta/src -ISrc/dpmta/mpole -I/usr/include/python2.3 -c Src/dpmta/mpole/mpe_mpoleLJ.c -o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_mpoleLJ.o -O3 -ffast-math -fomit-frame-pointer -fkeep-inline-functions
Src/dpmta/mpole/mpe_mpoleLJ.c: In function `AddMultipoleLJ':
Src/dpmta/mpole/mpe_mpoleLJ.c:84: warning: implicit declaration of function `Cart2Sph'
Src/dpmta/mpole/mpe_mpoleLJ.c:90: warning: suggest parentheses around + or - in operand of &
Src/dpmta/mpole/mpe_mpoleLJ.c: In function `M2L_LJ':
Src/dpmta/mpole/mpe_mpoleLJ.c:189: warning: unused variable `startm'
Src/dpmta/mpole/mpe_mpoleLJ.c:189: warning: unused variable `endm'
Src/dpmta/mpole/mpe_mpoleLJ.c: In function `M2L_LJshort':
Src/dpmta/mpole/mpe_mpoleLJ.c:263: warning: unused variable `startm'
Src/dpmta/mpole/mpe_mpoleLJ.c:263: warning: unused variable `endm'
Src/dpmta/mpole/mpe_mpoleLJ.c:265: warning: unused variable `Mend'
Src/dpmta/mpole/mpe_mpoleLJ.c: In function `Force_LJ':
Src/dpmta/mpole/mpe_mpoleLJ.c:453: warning: suggest parentheses around + or - in operand of &
Src/dpmta/mpole/mpe_mpoleLJ.c: In function `makeYII':
Src/dpmta/mpole/mpe_mpoleLJ.c:628: warning: suggest parentheses around + or - in operand of &
Src/dpmta/mpole/mpe_mpoleLJ.c:647: warning: suggest parentheses around + or - in operand of &
Src/dpmta/mpole/mpe_mpoleLJ.c: In function `copyYI':
Src/dpmta/mpole/mpe_mpoleLJ.c:1240: warning: suggest parentheses around + or - in operand of &
Src/dpmta/mpole/mpe_mpoleLJ.c: At top level:
Src/dpmta/mpole/mpe_mpoleLJ.c:12: warning: `RcsId' defined but not used
gcc -pthread -shared build/temp.linux-i686-2.3/Src/MMTK_forcefield.o build/temp.linux-i686-2.3/Src/bonded.o build/temp.linux-i686-2.3/Src/nonbonded.o build/temp.linux-i686-2.3/Src/ewald.o build/temp.linux-i686-2.3/Src/sparsefc.o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_fft.o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_misc.o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_mpoleC.o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_allocC.o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_mpoleLJ.o build/temp.linux-i686-2.3/Src/dpmta/mpole/mpe_allocLJ.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_serial.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmkcell.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmcalc.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvpcalc.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmkil.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmkhl.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvcompute.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvmacro.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvscale.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_timer.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_slvglobals.o build/temp.linux-i686-2.3/Src/dpmta/src/dpmta_distmisc.o -lm -o build/lib.linux-i686-2.3/MMTK/linux2/MMTK_forcefield.so
running build_scripts
creating build/scripts-2.3
copying and adjusting tviewer -> build/scripts-2.3
changing mode of build/scripts-2.3/tviewer from 644 to 755


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