[MMTK] normal mode output
pat.fleming at jhu.edu
Tue Nov 18 19:08:46 CET 2003
Thanks, I will try this. But what I really was after was a way to
decouple viewing from mmtk. I would like to have mmtk write out a
"trajectory" of the normal mode displacements as either a binary file or
as multiple PDB files.
The actual normal mode calculation is being done on a remote machine and
I would like to bring back the results to a local machine for viewing
Ryan Bannen wrote:
> If you are using VMD to do the visualization, there is a nice and easy way to
> export PDBs of the individual states of the trajectories. Once in VMD, in
> the "File" pull down menu, choose "Save Trajectory...". There, you can
> choose the kind of output you want as well as specifying the frame or frames
> you want to export.
> Is this was you were asking for or am I misunderstanding your question?
Patrick Fleming, Ph.D.
The Johns Hopkins University
Department of Biophysics
201 Jenkins Hall
3400 North Charles Street
Baltimore, MD 21218
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