[MMTK] findHydrogenPositions()

[Konrad Hinsen]

Kyle Krull <krullk@purdue.edu> writes:

> I have found a case where findHydrogenPositions() does not seem to work.
> The function does not raise an exception, but it also does not assign a
> position to one H.  I found this case while doing substitutions, which
> creates one special case that is modeled below.

Right, the case of one out of three H atoms bound to an N having
an undefined position was missing. I have added it now. I'll send
you the modified file (ChemicalObjects.py), if anyone else wants it,
just write, otherwise it will of course be in the next release.

Konrad.
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